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Human gut microbiome database

Web9 Sep 2024 · The gut microbe, substrate, metabolite and gene are organized based on NCBI Taxonomy database ( 22 ), PubChem ( 23 ), HMDB ( 24 ), ChEBI ( 25) and NCBI gene database. The experimental method includes cell culture, in vitro bacterial culture, in vivo infection experiment, control experiment, supplementation of metabolite and so on. Web29 Oct 2024 · The database connects the five resources through shared nomenclature: (i) the ‘Human metabolism’ and ‘Gut microbiome’ resources share metabolites and reactions, (ii) the nutrients in the ‘Nutrition’ resource are mapped to metabolites that can be shared by the human and gut microbes and (iii) the diseases in the ‘Disease’ resource include …

The Virtual Metabolic Human database: integrating human and …

Web12 Apr 2024 · The role of the human gut microbiome in colorectal cancer (CRC) is unclear as most studies on the topic are unable to discern correlation from causation. We apply … Web27 Aug 2024 · Information of the microbial genomes and coding genes is publicly available ( www.mbiomenet.org/HRGM/ ). HRGM will facilitate the identification and functional analysis of disease-associated gut microbiota. Background Human gut microbiome is considered the “second human genome” and plays a crucial role in various diseases [ 1, 2 ]. crochet sets for sale https://clearchoicecontracting.net

GMrepo v2: a curated human gut microbiome database …

Web24 Jun 2024 · Bacteriophages have important roles in the ecology of the human gut microbiome but are under-represented in reference databases. To address this problem, we assembled the Metagenomic Gut... Web17 Aug 2024 · Background: In the last twenty years, new methodologies have made possible the gathering of large amounts of data concerning the genetic information and metabolic … WebThe microbiome is even labeled a supporting organ because it plays so many key roles in promoting the smooth daily operations of the human body. Each person has an entirely unique network of microbiota that is … buff coloured cement

Massive expansion of human gut bacteriophage diversity

Category:MASI: microbiota—active substance interactions database

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Human gut microbiome database

gutMGene: a comprehensive database for target genes of gut …

Web8 Apr 2024 · The developing infant gut microbiome is highly sensitive to environmental exposures, enabling its evolution into an organ that supports the immune system, confers protection from infection, and facilitates optimal gut and central nervous system function. In this study, we focus on the impact of maternal psychosocial stress on the infant gut … Web30 Oct 2024 · Virtual Metabolic Human database (VMH) contains 17,730 unique reactions of microbiome metabolism with nutrition and diseases . gutMDisorder provides …

Human gut microbiome database

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Web16 Feb 2024 · We parsed the KEGG module database ... Gaskins HR, Anantharaman K: Diversity and distribution of sulfur metabolism in the human gut microbiome and its association with colorectal cancer. bioRxiv 2024:2024.2007.2001.450790. Huson DH, Beier S, Flade I, Górska A, El-Hadidi M, Mitra S, Ruscheweyh H-J, Tappu R. MEGAN … Web1 Jan 2024 · For instance, the human skin microbiome is highly personalized, depending on multiple factors, such as body site, age, ... GMrepo (a comprehensive gut …

http://gutmega.omicsbio.info/ http://raeslab.org/companion/gutsequencedb/

Web12 Apr 2024 · Observational studies revealed altered gut microbial composition in patients with allergic diseases, which illustrated a strong association between the gut … Web1 day ago · Gene sets were annotated for bacteria using Diamond (version 0.8.35) on the basis of the NCBI NR database. α-Diversity analysis (Ace, Shannon, Sobs and Simpson) was conducted based on the vegan packages in R. ... Gut Microbiome Composition in Non-human Primates Consuming a Western or Mediterranean Diet. Front Nutr, 5 (2024), p. 28.

Web9 Sep 2024 · To help researchers to better understand gut microbes, some important resources have been developed. For example, GMrepo and gutMEGA curated and …

Web5 Jul 2024 · Based on this set, we procure a new and improved human gut microbiome reference set of 3594 high quality species genomes, which successfully matches 83.65% … buff-colouredWeb28 Oct 2024 · In that regard, we developed mBodyMap, a curated database for microbes across 22 human body sites and their relationships with health and diseases. Overall, … buff coloured cotton cloth made in chinaWebThe team focusses on gut bacteria and viruses and their influence in long-term growth, development and disease resistance of children from Westernized and Low- and Middle-Income countries. About Database containing 142,809 non-redundant gut phage genomes from 28,060 metagenomes Downloads GPD database and metadata Download buff coloured cotton first made in chinaWeb2 Jul 2024 · The gut microbiome profoundly impacts human health and disease, but viruses that infect these microbes are likely also important. Problematically, viral sequences are often missed due to insufficient reference viral genomes. Here we (i) built a human gut virome database, GVD, from 648 viral particle metagenomes or microbial metagenomes … crochet set gameWeb15 Oct 2024 · Integrative analysis of microbiome and metabolome data obtained from human fecal samples is a promising avenue for better understanding the interplay between bacteria and metabolites in the... buff coloured concrete paving slabsWeb20 Jul 2024 · We present the Unified Human Gastrointestinal Genome (UHGG) collection, comprising 204,938 nonredundant genomes from 4,644 gut prokaryotes. These … buff coloured cotton fabric crosswordWebHuman Gut (9.9M) Gene Catalog Reference. Integrated non-redundant gene catalog (IGC, nucleotide sequences, fasta) Integrated non-redundant gene catalog (IGC, amino acid … crochet sets for babies